TY - JOUR
T1 - Automated pattern-guided principal component analysis vs expert-based immunophenotypic classification of B-cell chronic lymphoproliferative disorders
T2 - A step forward in the standardization of clinical immunophenotyping
AU - Costa, E. S.
AU - Pedreira, C. E.
AU - Barrena, S.
AU - Lecrevisse, Q.
AU - Flores, J.
AU - Quijano, S.
AU - Almeida, J.
AU - Del Carmen García- MacIas, M.
AU - Bottcher, S.
AU - Van Dongen, J. J.M.
AU - Orfao, A.
N1 - Funding Information:
This work has been partially supported by the following Grants: Spanish Network of Cancer Research Centers (ISCIII RTICC-RD06/0020/0035-FEDER), FIS 08/90881 from the ‘Fondo de Investigación Sanitaria’, Ministerio de Ciencia e Innovación (Madrid, Spain), Programa Hispano-Brasileño de Cooperación Universitaria Ref. PHB 2004-0800-PC (Ministerio de Educación y Ciencia) (Madrid, Spain), SA016-A-09 from the Consejería de Educación, Junta de Castilla y León, Valladolid, Spain, and CAPES/Ministério da Educac¸ão (Brasília, Brazil), the EuroFlow Consortium (Grant number LSHB-CT-2006-018708), from the European Commission and by the ‘Acción Transversal del Cáncer’ project through an agreement between the Instituto de Salud Carlos III (ISCIII), Ministerio de Ciencia e Innovación (Madrid, Spain) and the Cancer Research Foundation of the University of Salamanca (Salamanca, Spain). CEP and ESC were partially supported by a grant from CNPq-Brazilian National Research Council, Brasília, Brazil (Ref: 305306/2004-9, 558147/2008-9 PDP and 478234/2007-4) and FAPERJ-Fundac¸ão de amparo à pesquisa do Rio de Janeiro, (Rio de Janeiro, Brazil) (‘Pensa-Rio’ project E-26/110.301/2007, E-26/102-781/2008 CNE and ‘Jovens Pesquisadores’ no 03/2006). CEP and ESC were partially supported by a grant from Fundación Carolina, Spain. QL was supported by a grant from Fundación Marcelino Botín (Madrid, Spain).
PY - 2010/11/23
Y1 - 2010/11/23
N2 - Immunophenotypic characterization of B-cell chronic lymphoproliferative disorders (B-CLPD) is becoming increasingly complex due to usage of progressively larger panels of reagents and a high number of World Health Organization (WHO) entities. Typically, data analysis is performed separately for each stained aliquot of a sample; subsequently, an expert interprets the overall immunophenotypic profile (IP) of neoplastic B-cells and assigns it to specific diagnostic categories. We constructed a principal component analysis (PCA)-based tool to guide immunophenotypic classification of B-CLPD. Three reference groups of immunophenotypic data filesB-cell chronic lymphocytic leukemias (B-CLL; n10), mantle cell (MCL; n10) and follicular lymphomas (FL; n10)were built. Subsequently, each of the 175 cases studied was evaluated and assigned to either one of the three reference groups or to none of them (other B-CLPD). Most cases (89%) were correctly assigned to their corresponding WHO diagnostic group with overall positive and negative predictive values of 89 and 96%, respectively. The efficiency of the PCA-based approach was particularly high among typical B-CLL, MCL and FL vs other B-CLPD cases. In summary, PCA-guided immunophenotypic classification of B-CLPD is a promising tool for standardized interpretation of tumor IP, their classification into well-defined entities and comprehensive evaluation of antibody panels.
AB - Immunophenotypic characterization of B-cell chronic lymphoproliferative disorders (B-CLPD) is becoming increasingly complex due to usage of progressively larger panels of reagents and a high number of World Health Organization (WHO) entities. Typically, data analysis is performed separately for each stained aliquot of a sample; subsequently, an expert interprets the overall immunophenotypic profile (IP) of neoplastic B-cells and assigns it to specific diagnostic categories. We constructed a principal component analysis (PCA)-based tool to guide immunophenotypic classification of B-CLPD. Three reference groups of immunophenotypic data filesB-cell chronic lymphocytic leukemias (B-CLL; n10), mantle cell (MCL; n10) and follicular lymphomas (FL; n10)were built. Subsequently, each of the 175 cases studied was evaluated and assigned to either one of the three reference groups or to none of them (other B-CLPD). Most cases (89%) were correctly assigned to their corresponding WHO diagnostic group with overall positive and negative predictive values of 89 and 96%, respectively. The efficiency of the PCA-based approach was particularly high among typical B-CLL, MCL and FL vs other B-CLPD cases. In summary, PCA-guided immunophenotypic classification of B-CLPD is a promising tool for standardized interpretation of tumor IP, their classification into well-defined entities and comprehensive evaluation of antibody panels.
KW - B-cell chronic lymphoproliferative disorders
KW - FCS data
KW - flow cytometry
KW - haematological malignancies
KW - immunophenotyping
KW - principal component analysis
UR - http://www.scopus.com/inward/record.url?scp=78149465908&partnerID=8YFLogxK
U2 - 10.1038/leu.2010.160
DO - 10.1038/leu.2010.160
M3 - Article
C2 - 20844562
AN - SCOPUS:78149465908
SN - 0887-6924
VL - 24
SP - 1927
EP - 1933
JO - Leukemia
JF - Leukemia
IS - 11
ER -