Named Entity Recognition over Electronic Health Records Through a Combined Dictionary-based Approach

Alexandra Pomares Quimbaya, Alejandro Sierra Múnera, Rafael Andrés González Rivera, Julián Camilo Daza Rodríguez, Oscar Mauricio Muñoz Velandia, Angel Alberto Garcia Peña, Cyril Labbé

Research output: Contribution to journalConference articlepeer-review

96 Scopus citations

Abstract

In health care information systems, electronic health records are an important part of the knowledge concerning individual health histories. Extracting valuable knowledge from these records represents a challenging task because they are composed of data of different kind: images, test results, narrative texts that include both highly codified and a variety of notes which are diverse in language and detail, as well as ad hoc terminology, including acronyms and jargon, far from being highly codified. This paper proposes a combined approach for the recognition of named entities in such narrative texts. This approach is a composition of three different methods. The possible combinations are evaluated and the resulting composition shows an improvement of the recall and a limited impact on precision for the named entity recognition process.

Keywords

  • Electronic Health Records
  • Named Entity Recognition
  • Text Mining

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